Publications

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Journal Article
Large-scale interactive numerical experiments of chaos, solitons and fractals in real time via GPU in a web browser, Kaboudian, Abouzar, CHERRY ELIZABETH M., and FENTON FLAVIO H. , Chaos, Solitons & Fractals, Volume 121, p.6–29, (2019)
Mechanism for amplitude alternans in electrocardiograms and the initiation of spatiotemporal chaos, Chen, Diandian Diana, Gray Richard A., Uzelac Ilija, Herndon Conner, and Fenton Flavio H. , Physical Review Letters, Volume 118, p.168101, (2017)
A Menagerie of Timed Automata (vol 50, 42, 2017), Keiren, Jeroen J. A., Fontana Peter, and Cleaveland Rance , ACM COMPUTING SURVEYS, Volume 50, (2017)
Model-Order Reduction of Ion Channel Dynamics Using Approximate Bisimulation, Islam, Md. A., Murthy A., Bartocci E., Cherry E. M., Fenton F. H., Glimm J., Smolka S. A., and Grosu R. , Theoretical Computer Science, 09/2015, Volume 599C, (2015)
Neural Predictive Monitoring and a Comparison of Frequentist and Bayesian Approaches, Bortolussi, L., Cairoli F., Paoletti N., Smolka S. A., and Stoller S. D. , International Journal on Software Tools for Technology Transfer, 05/2021, (2021)
An Optimization-Based Algorithm for the Construction of Cardiac Purkinje Network Models, Ulysses, Jesuliana N., Berg Lucas A., CHERRY ELIZABETH M., Liu Ben R., Santos Rodrigo W. dos, de Barros Bruno G., Rocha Bernardo M., and de Queiroz Rafael A. B. , IEEE Transactions on Biomedical Engineering, Volume 65, p.2760–2768, (2018)
Probabilistic reachability for multi-parameter bifurcation analysis of cardiac alternans, Islam, Md Ariful, Cleaveland Rance, Fenton Flavio H., Grosu Radu, Jones Paul L., and Smolka Scott A. , Theoretical Computer Science, Volume 765, p.158–169, (2019)
Probabilistic reachability for multi-parameter bifurcation analysis of cardiac alternans, Islam, Md. Ariful, Cleaveland Rance, FENTON FLAVIO H., Grosu Radu, Jones Paul L., and Smolka Scott A. , Theoretical Computer Science, 02/2018, (2018)  (1.99 MB)
Quantifying arrhythmic long QT effects of hydroxychloroquine and azithromycin with whole-heart optical mapping and simulations, Uzelac, Ilija, Kaboudian Abouzar, Iravanian Shahriar, Siles-Paredes Jimena G., Gumbart James C., Ashikaga Hiroshi, Bhatia Neal, Gilmour, Jr Robert F., Cherry Elizabeth M., and Fenton Flavio H. , Heart Rhythm O2, 08/2021, Volume 2, Issue 4, (2021)
Real-time interactive simulations of large-scale systems on personal computers and cell phones: Toward patient-specific heart modeling and other applications, Kaboudian, Abouzar, CHERRY ELIZABETH M., and FENTON FLAVIO H. , Science Advances, Volume 5, p.eaav6019, (2019)
The role of conductivity discontinuities in design of cardiac defibrillation, Lim, Hyunkyung, Cun Wenjing, Wang Yue, Gray Richard A., and Glimm James , Chaos: An Interdisciplinary Journal of Nonlinear Science, Volume 28, p.013106, (2018)  (3 MB) (552.91 KB)
Security assurance cases for medical cyber–physical systems, Ray, Arnab, and Cleaveland Rance , IEEE Design & Test, Volume 32, p.56–65, (2015)
Simultaneous Quantification of Spatially Discordant Alternans in Voltage and Intracellular Calcium in Langendorff-Perfused Rabbit Hearts and Inconsistencies with Models of Cardiac Action Potentials and Ca Transients, Uzelac, Ilija, Ji Yanyan C., Hornung Daniel, Schröder-Scheteling Johannes, Luther Stefan, Gray Richard A., CHERRY ELIZABETH M., and FENTON FLAVIO H. , Frontiers in Physiology, Volume 8, (2017)
Single-variable delay-differential equation approximations of the Fitzhugh-Nagumo and Hodgkin-Huxley models, Rameh, Raffael Bechara, CHERRY ELIZABETH M., and Santos Rodrigo Weber dos , Communications in Nonlinear Science and Numerical Simulation, Volume 82, p.105066, (2020)
Spatiotemporal correlation uncovers characteristic lengths in cardiac tissue, Loppini, Alessandro, Gizzi Alessio, Cherubini Christian, CHERRY ELIZABETH M., FENTON FLAVIO H., and Filippi Simonetta , Physical Review E, Volume 100, (2019)
Spatiotemporal correlation uncovers characteristic lengths in cardiac tissue, Loppini, Alessandro, Gizzi Alessio, Cherubini Christian, CHERRY ELIZABETH M., FENTON FLAVIO H., and Filippi Simonetta , Physical Review E, Volume 100, (2019)
Swarm Model Checking on the GPU, DeFrancisco, R., Cho S., Ferdman M., and Smolka S. A. , International Journal on Software Tools for Technology Transfer, (2020)
A tableau construction for finite linear-time temporal logic, Huang, Samuel, and Cleaveland Rance , arXiv preprint arXiv:1910.09339, (2019)
Timed Automata Benchmark Description, Fontana, Peter, and Cleaveland Rance , arXiv preprint arXiv:2005.13151, (2020)
Miscellaneous
From Reactive Systems to Cyber-physical Systems: Essays Dedicated to Scott A. Smolka on the Occasion of His 65th Birthday, Bartocci, Ezio, Cleaveland Rance, Grosu Radu, and Sokolsky Oleg , (2019)
Lagrangian Reachtubes: The Next Generation, Gruenbacher, Sophie, Cyranka Jacek, Lechner Mathias, Islam Md. Ariful, Smolka Scott A., and Grosu Radu , (2020)
On The Verification of Neural ODEs with Stochastic Guarantees, Gruenbacher, Sophie, Hasani Ramin, Lechner Mathias, Cyranka Jacek, Smolka Scott A., and Grosu Radu , (2020)
Web Article
SHARP BOUNDARY ELECTROCARDIAC SIMULATIONS, XUE, SHUAI, LIM HYUNKYUNG, GLIMM JAMES, FENTON FLAVIO H., and CHERRY ELIZABETH M. , Stony Brook, (2016)  (725.88 KB)

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