Publications

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Towards Automated Comprehension and Alignment of Cardiac Models at the System Invariant Level, Huang, Samuel, Diep Madeline, Jang Kuk, Cherry Elizabeth M., Fenton Flavio H., Cleaveland Rance, Lindvall Mikael, Mangharam Rahul, and Porter Adam , CSBio'20: Proceedings of the Eleventh International Conference on Computational Systems-Biology and Bioinformatics, (2020)
Timed Automata Benchmark Description, Fontana, Peter, and Cleaveland Rance , arXiv preprint arXiv:2005.13151, (2020)
Terminating spiral waves with a single designed stimulus: Teleportation as the mechanism for defibrillation, DeTal, Noah, Kaboudian Abouzar, and Fenton Flavio , arXiv preprint arXiv:2109.10850, 09/2021, (2021)
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Swarm Model Checking on the GPU, DeFrancisco, R., Cho S., Ferdman M., and Smolka S. A. , International Journal on Software Tools for Technology Transfer, (2020)
Spatiotemporal correlation uncovers characteristic lengths in cardiac tissue, Loppini, Alessandro, Gizzi Alessio, Cherubini Christian, CHERRY ELIZABETH M., FENTON FLAVIO H., and Filippi Simonetta , Physical Review E, Volume 100, (2019)
Spatiotemporal correlation uncovers characteristic lengths in cardiac tissue, Loppini, Alessandro, Gizzi Alessio, Cherubini Christian, CHERRY ELIZABETH M., FENTON FLAVIO H., and Filippi Simonetta , Physical Review E, Volume 100, (2019)
Simultaneous Quantification of Spatially Discordant Alternans in Voltage and Intracellular Calcium in Langendorff-Perfused Rabbit Hearts and Inconsistencies with Models of Cardiac Action Potentials and Ca Transients, Uzelac, Ilija, Ji Yanyan C., Hornung Daniel, Schröder-Scheteling Johannes, Luther Stefan, Gray Richard A., CHERRY ELIZABETH M., and FENTON FLAVIO H. , Frontiers in Physiology, Volume 8, (2017)
Simulating waves, chaos and synchronization with a microcontroller, Welsh, Andrea J., Delgado Cristian, Lee-Trimble Casey, Kaboudian Abouzar, and Fenton Flavio H. , Chaos: An Interdisciplinary Journal of Nonlinear Science, 12/2019, Volume 29, Issue 12, (2019)
SHARP BOUNDARY ELECTROCARDIAC SIMULATIONS, XUE, SHUAI, LIM HYUNKYUNG, GLIMM JAMES, FENTON FLAVIO H., and CHERRY ELIZABETH M. , Stony Brook, (2016)  (725.88 KB)
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Real-time interactive simulations of large-scale systems on personal computers and cell phones: Toward patient-specific heart modeling and other applications, Kaboudian, Abouzar, CHERRY ELIZABETH M., and FENTON FLAVIO H. , Science Advances, Volume 5, p.eaav6019, (2019)
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Quantifying arrhythmic long QT effects of hydroxychloroquine and azithromycin with whole-heart optical mapping and simulations, Uzelac, Ilija, Kaboudian Abouzar, Iravanian Shahriar, Siles-Paredes Jimena G., Gumbart James C., Ashikaga Hiroshi, Bhatia Neal, Gilmour, Jr Robert F., Cherry Elizabeth M., and Fenton Flavio H. , Heart Rhythm O2, 08/2021, Volume 2, Issue 4, (2021)
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Probabilistic reachability for multi-parameter bifurcation analysis of cardiac alternans, Islam, Md Ariful, Cleaveland Rance, Fenton Flavio H., Grosu Radu, Jones Paul L., and Smolka Scott A. , Theoretical Computer Science, Volume 765, p.158–169, (2019)
Probabilistic reachability for multi-parameter bifurcation analysis of cardiac alternans, Islam, Md. Ariful, Cleaveland Rance, FENTON FLAVIO H., Grosu Radu, Jones Paul L., and Smolka Scott A. , Theoretical Computer Science, 02/2018, (2018)  (1.99 MB)
Parallel Acceleration on Removal of Optical Mapping Baseline Wandering, Uzelac, Ilija, Iravanian Shahriar, and Fenton Flavio H. , 2019 Computing in Cardiology (CinC), 09/2019, (2019)
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Optimizing low-energy anti-fibrillation pacing: Lessons from a cellular automaton model, DeTal, Noah, and Fenton Flavio , arXiv preprint arXiv:2109.10861, 09/2021, (2021)
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A Network-based Cardiac Electrophysiology Simulator with Realistic Signal Generation and Response to Pacing Maneuvers, Iravanian, Shahriar, Uzelac Ilija, Kaboudian Abouzar, Langberg Jonathan, and Fenton Flavio , Computing in Cardiology, (2021)
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Model-Order Reduction of Ion Channel Dynamics Using Approximate Bisimulation, Islam, Md. A., Murthy A., Bartocci E., Cherry E. M., Fenton F. H., Glimm J., Smolka S. A., and Grosu R. , Theoretical Computer Science, 09/2015, Volume 599C, (2015)
A Menagerie of Timed Automata (vol 50, 42, 2017), Keiren, Jeroen J. A., Fontana Peter, and Cleaveland Rance , ACM COMPUTING SURVEYS, Volume 50, (2017)
Mechanism for amplitude alternans in electrocardiograms and the initiation of spatiotemporal chaos, Chen, Diandian Diana, Gray Richard A., Uzelac Ilija, Herndon Conner, and Fenton Flavio H. , Physical Review Letters, Volume 118, p.168101, (2017)
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Large-scale interactive numerical experiments of chaos, solitons and fractals in real time via GPU in a web browser, Kaboudian, Abouzar, CHERRY ELIZABETH M., and FENTON FLAVIO H. , Chaos, Solitons & Fractals, Volume 121, p.6–29, (2019)
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Interactive 3D Human Heart Simulations on Segmented Human MRI Hearts, Berman, John P., FENTON FLAVIO H., CHERRY ELIZABETH M., Iles Tinen, Iaizzo Paul A., and Kaboudian Abouzar , (2021)
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Fatal arrhythmias: another reason why doctors remain cautious about chloroquine/hydroxychloroquine for treating COVID-19, Uzelac, Ilija, Iravanian Shahriar, Ashikaga Hiroshi, Bhatia Neal K., Herndon Conner, Kaboudian Abouzar, Gumbart James C., Cherry Elizabeth M., and Fenton Flavio H. , Heart Rhythm, 09/2020, Volume 17, Issue 9, (2020)
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Excitable dynamics in neural and cardiac systems, Barrio, Roberto, Coombes Stephen, Desroches Mathieu, Fenton Flavio, Luther Stefan, and Pueyo Esther , Communications in Nonlinear Science and Numerical Simulation, 07/2020, Volume 86, (2020)
Electromechanical vortex filaments during cardiac fibrillation, Christoph, Jan, Chebbok M., Richter Carl, Schröder-Schetelig Johannes, Bittihn Philip, Stein Seth, Uzelac Ilija, FENTON FLAVIO H., Hasenfuss Gerd, Gilmour Robert F., et al. , Nature, Volume 555, p.667+, (2018)  (11.33 MB)
Efficient parameterization of cardiac action potential models using a genetic algorithm, Cairns, Darby I., Fenton Flavio H., and Cherry E. M. , Chaos: An Interdisciplinary Journal of Nonlinear Science, Volume 27, p.093922, (2017)

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