Publications

Model-Order Reduction of Ion Channel Dynamics Using Approximate Bisimulation, Islam, Md. A., Murthy A., Bartocci E., Cherry E. M., Fenton F. H., Glimm J., Smolka S. A., and Grosu R. , Theoretical Computer Science, 09/2015, Volume 599C, (2015)

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Bifurcation Analysis of Cardiac Alternans Using δ -Decidability., Islam, Md. Ariful, Byrne Greg, Kong Soonho, Clarke Edmund M., Cleaveland Rance, Fenton Flavio H., Grosu Radu, Jones Paul L., and Smolka Scott A. , CMSB, (2016)

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SHARP BOUNDARY ELECTROCARDIAC SIMULATIONS, XUE, SHUAI, LIM HYUNKYUNG, GLIMM JAMES, FENTON FLAVIO H., and CHERRY ELIZABETH M. , Stony Brook, (2016)

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Bisimulation and Hennessy-Milner Logic for Generalized Synchronization Trees, Ferlez, James, Cleaveland Rance, and Marcus Steven I. , Proceedings Combined 24th International Workshop on Expressiveness in Concurrency and 14th Workshop on Structural Operational Semantics and 14th Workshop on Structural Operational Semantics, {EXPRESS/SOS} 2017, Berlin, Germany, 4th September 2017., (2017)

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Corrections to "A Menagerie of Timed Automata", Keiren, Jeroen J. A., Fontana Peter, and Cleaveland Rance , ACM Comput. Surv., Volume 50, p.42:1–42:8, (2017)

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Data assimilation for cardiac electrical dynamics, Cherry, E. M., Cairns D. I., Holt N., LaVigne N. S., Fenton F. H., and Hoffman M. J. , Proceedings of the 5th {International} {Conference} on {Computational} and {Mathematical} {Biomedical} {Engineering}, Pittsburgh, PA, (2017)

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Dynamics of a human spiral wave, Welsh, Andrea J., Greco Edwin F., and Fenton Flavio H. , Phys. Today, 02/2017, Volume 70, (2017)

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Efficient parameterization of cardiac action potential models using a genetic algorithm, Cairns, Darby I., Fenton Flavio H., and Cherry E. M. , Chaos: An Interdisciplinary Journal of Nonlinear Science, Volume 27, p.093922, (2017)

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Mechanism for amplitude alternans in electrocardiograms and the initiation of spatiotemporal chaos, Chen, Diandian Diana, Gray Richard A., Uzelac Ilija, Herndon Conner, and Fenton Flavio H. , Physical Review Letters, Volume 118, p.168101, (2017)

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A Menagerie of Timed Automata (vol 50, 42, 2017), Keiren, Jeroen J. A., Fontana Peter, and Cleaveland Rance , ACM COMPUTING SURVEYS, Volume 50, (2017)

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Simultaneous Quantification of Spatially Discordant Alternans in Voltage and Intracellular Calcium in Langendorff-Perfused Rabbit Hearts and Inconsistencies with Models of Cardiac Action Potentials and Ca Transients, Uzelac, Ilija, Ji Yanyan C., Hornung Daniel, Schröder-Scheteling Johannes, Luther Stefan, Gray Richard A., CHERRY ELIZABETH M., and FENTON FLAVIO H. , Frontiers in Physiology, Volume 8, (2017)

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Bisimulation in Behavioral Dynamical Systems and Generalized Synchronization Trees, Ferlez, James, Cleaveland Rance, and Marcus Steven I. , 2018 IEEE Conference on Decision and Control (CDC), (2018)

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Discordant Alternans as a Mechanism for Initiation of Ventricular Fibrillation In Vitro, Munoz, Laura, Gelzer Anna R. M., Fenton Flavio, Qian Wei, Lin WeiYe, Gilmour Robert F., and Otani Niels F. , Journal of the American Heart Association, 09, Volume 7, (2018)

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 (4.08 MB)

Electromechanical vortex filaments during cardiac fibrillation, Christoph, Jan, Chebbok M., Richter Carl, Schröder-Schetelig Johannes, Bittihn Philip, Stein Seth, Uzelac Ilija, FENTON FLAVIO H., Hasenfuss Gerd, Gilmour Robert F., et al. , Nature, Volume 555, p.667+, (2018)

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Probabilistic reachability for multi-parameter bifurcation analysis of cardiac alternans, Islam, Md. Ariful, Cleaveland Rance, FENTON FLAVIO H., Grosu Radu, Jones Paul L., and Smolka Scott A. , Theoretical Computer Science, 02/2018, (2018)

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Large-scale interactive numerical experiments of chaos, solitons and fractals in real time via GPU in a web browser, Kaboudian, Abouzar, CHERRY ELIZABETH M., and FENTON FLAVIO H. , Chaos, Solitons & Fractals, Volume 121, p.6–29, (2019)

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Parallel Acceleration on Removal of Optical Mapping Baseline Wandering, Uzelac, Ilija, Iravanian Shahriar, and Fenton Flavio H. , 2019 Computing in Cardiology (CinC), 09/2019, (2019)

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Probabilistic reachability for multi-parameter bifurcation analysis of cardiac alternans, Islam, Md Ariful, Cleaveland Rance, Fenton Flavio H., Grosu Radu, Jones Paul L., and Smolka Scott A. , Theoretical Computer Science, Volume 765, p.158–169, (2019)

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Real-time interactive simulations of large-scale systems on personal computers and cell phones: Toward patient-specific heart modeling and other applications, Kaboudian, Abouzar, CHERRY ELIZABETH M., and FENTON FLAVIO H. , Science Advances, Volume 5, p.eaav6019, (2019)

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Simulating waves, chaos and synchronization with a microcontroller, Welsh, Andrea J., Delgado Cristian, Lee-Trimble Casey, Kaboudian Abouzar, and Fenton Flavio H. , Chaos: An Interdisciplinary Journal of Nonlinear Science, 12/2019, Volume 29, Issue 12, (2019)

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Spatiotemporal correlation uncovers characteristic lengths in cardiac tissue, Loppini, Alessandro, Gizzi Alessio, Cherubini Christian, CHERRY ELIZABETH M., FENTON FLAVIO H., and Filippi Simonetta , Physical Review E, Volume 100, (2019)

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Spatiotemporal correlation uncovers characteristic lengths in cardiac tissue, Loppini, Alessandro, Gizzi Alessio, Cherubini Christian, CHERRY ELIZABETH M., FENTON FLAVIO H., and Filippi Simonetta , Physical Review E, Volume 100, (2019)

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Accelerating simulations of cardiac electrical dynamics through a multi‐GPU platform and an optimized data structure, Vasconcellos, Eduardo C., Clua Esteban W. G., Fenton Flavio H., and Zamith Marcelo , Concurrency and Computation: Practice and Experience, 03/2020, Volume 32, Issue 5, (2020)

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Data-Driven Uncertainty Quantification for Cardiac Electrophysiological Models: Impact of Physiological Variability on Action Potential and Spiral Wave Dynamics, Pathmanathan, Pras, Galappaththige Suran K., Cordeiro Jonathan M., Kaboudian Abouzar, Fenton Flavio H., and Gray Richard A. , Frontiers in physiology, 11/2020, Volume 11, (2020)

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Excitable dynamics in neural and cardiac systems, Barrio, Roberto, Coombes Stephen, Desroches Mathieu, Fenton Flavio, Luther Stefan, and Pueyo Esther , Communications in Nonlinear Science and Numerical Simulation, 07/2020, Volume 86, (2020)

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